J3_7NHM_002

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGUUACUAACG*UGC*GAUUU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHM_002 not in the Motif Atlas

Homologous match to J3_4WF9_001

Geometric discrepancy: 0.129

The information below is about J3_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47707.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F

Number of instances in this motif group

1

Unit IDs

7NHM|1|A|A|56
7NHM|1|A|C|57
7NHM|1|A|G|58
7NHM|1|A|U|59
7NHM|1|A|U|60
7NHM|1|A|A|61
7NHM|1|A|C|62
7NHM|1|A|U|63
7NHM|1|A|A|64
7NHM|1|A|A|65
7NHM|1|A|C|66
7NHM|1|A|G|67
*
7NHM|1|A|U|74
7NHM|1|A|G|75
7NHM|1|A|C|76
*
7NHM|1|A|G|109
7NHM|1|A|A|110
7NHM|1|A|U|111
7NHM|1|A|U|112
7NHM|1|A|U|113

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L29

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23