J3_7NHM_003

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7NHM|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHM_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1578

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7NHM|1|A|C|272
7NHM|1|A|A|273
7NHM|1|A|A|274
7NHM|1|A|A|275
7NHM|1|A|C|276
*
7NHM|1|A|G|295
7NHM|1|A|G|296
7NHM|1|A|G|297
7NHM|1|A|U|298
7NHM|1|A|U|299
7NHM|1|A|G|300
7NHM|1|A|U|301
7NHM|1|A|A|302
*
7NHM|1|A|U|415
7NHM|1|A|G|416

Current chains

Chain A

23S rRNA

Nearby chains