J3_7NHM_004

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7NHM|1|A|U|731, 7NHM|1|A|G|837, 7NHM|1|A|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHM_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0885

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7NHM|1|A|U|728
7NHM|1|A|G|729
7NHM|1|A|A|730
7NHM|1|A|U|731
7NHM|1|A|C|732
7NHM|1|A|U|733
7NHM|1|A|A|734
*
7NHM|1|A|U|818
7NHM|1|A|A|819
7NHM|1|A|G|820
*
7NHM|1|A|C|836
7NHM|1|A|G|837
7NHM|1|A|A|838
7NHM|1|A|A|839

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain G

50S ribosomal protein L2