3D structure

PDB id
7NHM (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGG*CUUG*CG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NHM_017 not in the Motif Atlas
Homologous match to J3_5J7L_002
Geometric discrepancy: 0.1471
The information below is about J3_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.5
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

7NHM|1|a|C|594
7NHM|1|a|G|595
7NHM|1|a|G|596
*
7NHM|1|a|C|659
7NHM|1|a|U|660
7NHM|1|a|U|661
7NHM|1|a|G|662
*
7NHM|1|a|C|762
7NHM|1|a|G|763

Current chains

Chain a
16S rRNA

Nearby chains

Chain i
30S ribosomal protein S8
Chain m
30S ribosomal protein S12
Chain p
30S ribosomal protein S15
Chain r
30S ribosomal protein S17

Coloring options:


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