J3_7NHM_034
3D structure
- PDB id
- 7NHM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCU*ACUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 7NHM|1|A|A|2415, 7NHM|1|A|U|2417, 7NHM|1|A|A|2453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHM_034 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1188
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7NHM|1|A|G|2309
7NHM|1|A|C|2310
7NHM|1|A|U|2311
*
7NHM|1|A|A|2411
7NHM|1|A|C|2412
7NHM|1|A|U|2413
7NHM|1|A|U|2414
7NHM|1|A|A|2415
7NHM|1|A|G|2416
7NHM|1|A|U|2417
7NHM|1|A|G|2418
7NHM|1|A|A|2419
7NHM|1|A|U|2420
7NHM|1|A|C|2421
7NHM|1|A|C|2422
*
7NHM|1|A|G|2448
7NHM|1|A|C|2449
7NHM|1|A|U|2450
7NHM|1|A|C|2451
7NHM|1|A|A|2452
7NHM|1|A|A|2453
7NHM|1|A|C|2454
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L33 2
- Chain 8
- 50S ribosomal protein L35
- Chain O
- 50S ribosomal protein L15
- Chain Z
- 50S ribosomal protein L27
Coloring options: