J3_7NHM_037

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

7NHM|1|a|U|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHM_037 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1576

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7NHM|1|a|C|1000
7NHM|1|a|U|1001
7NHM|1|a|U|1002
7NHM|1|a|G|1003
7NHM|1|a|A|1004
7NHM|1|a|C|1005
7NHM|1|a|A|1006
7NHM|1|a|U|1007
*
7NHM|1|a|A|1056
7NHM|1|a|C|1057
7NHM|1|a|A|1058
7NHM|1|a|G|1059
*
7NHM|1|a|C|1221
7NHM|1|a|U|1222
7NHM|1|a|U|1223
7NHM|1|a|A|1224
7NHM|1|a|U|1225
7NHM|1|a|G|1226

Current chains

Chain a

16S rRNA

Nearby chains

Chain o

30S ribosomal protein S14 type Z