J3_7NHN_003

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7NHN|1|A|U|300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHN_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1611

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7NHN|1|A|C|271
7NHN|1|A|A|272
7NHN|1|A|A|273
7NHN|1|A|A|274
7NHN|1|A|C|275
*
7NHN|1|A|G|294
7NHN|1|A|G|295
7NHN|1|A|G|296
7NHN|1|A|U|297
7NHN|1|A|U|298
7NHN|1|A|G|299
7NHN|1|A|U|300
7NHN|1|A|A|301
*
7NHN|1|A|U|415
7NHN|1|A|G|416

Current chains

Chain A

23S rRNA

Nearby chains