J3_7NHN_004

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7NHN|1|A|U|732, 7NHN|1|A|G|838, 7NHN|1|A|A|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHN_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.094

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7NHN|1|A|U|729
7NHN|1|A|G|730
7NHN|1|A|A|731
7NHN|1|A|U|732
7NHN|1|A|C|733
7NHN|1|A|U|734
7NHN|1|A|A|735
*
7NHN|1|A|U|819
7NHN|1|A|A|820
7NHN|1|A|G|821
*
7NHN|1|A|C|837
7NHN|1|A|G|838
7NHN|1|A|A|839
7NHN|1|A|A|840

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain G

50S ribosomal protein L2

Chain I

50S ribosomal protein L4