J3_7NHN_005

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHN_005 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0825

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7NHN|1|A|C|744
7NHN|1|A|A|745
7NHN|1|A|G|746
*
7NHN|1|A|C|778
7NHN|1|A|G|779
7NHN|1|A|A|780
7NHN|1|A|A|781
7NHN|1|A|C|782
*
7NHN|1|A|G|806
7NHN|1|A|A|807
7NHN|1|A|U|808
7NHN|1|A|G|809

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2