J3_7NHN_010

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGACA*UC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHN_010 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2359

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

7NHN|1|A|U|1475
7NHN|1|A|G|1476
7NHN|1|A|A|1477
7NHN|1|A|C|1478
7NHN|1|A|A|1479
*
7NHN|1|A|U|1616
7NHN|1|A|C|1617
*
7NHN|1|A|G|1620
7NHN|1|A|A|1621
7NHN|1|A|A|1622
7NHN|1|A|A|1623
7NHN|1|A|A|1624
7NHN|1|A|G|1625

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2