J3_7NHN_024

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHN_024 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1135

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

7NHN|1|a|C|1001
7NHN|1|a|U|1002
7NHN|1|a|U|1003
7NHN|1|a|G|1004
*
7NHN|1|a|C|1056
7NHN|1|a|A|1057
7NHN|1|a|G|1058
*
7NHN|1|a|C|1219
7NHN|1|a|U|1220
7NHN|1|a|U|1221
7NHN|1|a|A|1222
7NHN|1|a|U|1223
7NHN|1|a|G|1224

Current chains

Chain a

16S rRNA

Nearby chains

Chain o

30S ribosomal protein S14 type Z