J3_7NHN_032
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCC*GCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 7NHN|1|A|A|2421, 7NHN|1|A|U|2423, 7NHN|1|A|A|2459
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHN_032 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1106
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7NHN|1|A|G|2315
7NHN|1|A|C|2316
7NHN|1|A|C|2317
*
7NHN|1|A|G|2417
7NHN|1|A|C|2418
7NHN|1|A|U|2419
7NHN|1|A|U|2420
7NHN|1|A|A|2421
7NHN|1|A|G|2422
7NHN|1|A|U|2423
7NHN|1|A|G|2424
7NHN|1|A|A|2425
7NHN|1|A|U|2426
7NHN|1|A|C|2427
7NHN|1|A|C|2428
*
7NHN|1|A|G|2454
7NHN|1|A|C|2455
7NHN|1|A|U|2456
7NHN|1|A|C|2457
7NHN|1|A|A|2458
7NHN|1|A|A|2459
7NHN|1|A|C|2460
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- Lmo0919 protein
- Chain 6
- 50S ribosomal protein L33 1
- Chain 8
- 50S ribosomal protein L35
- Chain O
- 50S ribosomal protein L15
- Chain Z
- 50S ribosomal protein L27
Coloring options: