J3_7NHN_037
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGA*UGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 7NHN|1|a|U|1192
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHN_037 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1369
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NHN|1|a|U|1127
7NHN|1|a|G|1128
7NHN|1|a|A|1129
*
7NHN|1|a|U|1165
7NHN|1|a|G|1166
7NHN|1|a|A|1167
7NHN|1|a|C|1168
7NHN|1|a|U|1169
7NHN|1|a|G|1170
7NHN|1|a|C|1171
*
7NHN|1|a|G|1184
7NHN|1|a|A|1185
7NHN|1|a|G|1186
7NHN|1|a|G|1187
7NHN|1|a|A|1188
7NHN|1|a|A|1189
7NHN|1|a|G|1190
7NHN|1|a|G|1191
7NHN|1|a|U|1192
7NHN|1|a|G|1193
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S2
- Chain j
- 30S ribosomal protein S9
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14 type Z
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