J3_7NQL_010

3D structure

PDB id

7NQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAG*CCAAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NQL_010 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.2055

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7NQL|1|BA|C|266
7NQL|1|BA|A|267
7NQL|1|BA|G|268
*
7NQL|1|BA|C|279
7NQL|1|BA|C|280
7NQL|1|BA|A|281
7NQL|1|BA|A|282
7NQL|1|BA|C|283
*
7NQL|1|BA|G|307
7NQL|1|BA|A|308
7NQL|1|BA|A|309
7NQL|1|BA|G|310

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BD

uL2m

Chain Ba

Mitochondrial ribosomal protein L37