J3_7NRC_013
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 7NRC|1|LA|G|2549, 7NRC|1|LA|U|2550, 7NRC|1|LA|U|2551, 7NRC|1|LA|A|2554, 7NRC|1|LA|U|2558, 7NRC|1|LA|U|2559, 7NRC|1|LA|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRC_013 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.155
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
7NRC|1|LA|A|2529
7NRC|1|LA|G|2530
7NRC|1|LA|C|2531
7NRC|1|LA|U|2532
*
7NRC|1|LA|A|2547
7NRC|1|LA|C|2548
7NRC|1|LA|G|2549
7NRC|1|LA|U|2550
7NRC|1|LA|U|2551
7NRC|1|LA|C|2552
7NRC|1|LA|U|2553
7NRC|1|LA|A|2554
7NRC|1|LA|G|2555
7NRC|1|LA|C|2556
7NRC|1|LA|A|2557
7NRC|1|LA|U|2558
7NRC|1|LA|U|2559
7NRC|1|LA|C|2560
7NRC|1|LA|A|2561
7NRC|1|LA|A|2562
7NRC|1|LA|G|2563
*
7NRC|1|LA|U|2578
7NRC|1|LA|G|2579
7NRC|1|LA|A|2580
7NRC|1|LA|U|2581
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LZ
- 60S ribosomal protein L25
- Chain Lb
- 60S ribosomal protein L27-A
- Chain Le
- 60S ribosomal protein L30
- Chain Li
- 60S ribosomal protein L34-A
- Chain Lr
- 60S ribosomal protein L43-A
Coloring options: