3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUUAAUUU*GGGGAAACUCAC*GGCCG
Length
25 nucleotides
Bulged bases
7NRC|1|S2|G|1199, 7NRC|1|S2|G|1201
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NRC_025 not in the Motif Atlas
Homologous match to J3_8C3A_040
Geometric discrepancy: 0.1082
The information below is about J3_8C3A_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.3
Basepair signature
cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

7NRC|1|S2|C|1180
7NRC|1|S2|U|1181
7NRC|1|S2|U|1182
7NRC|1|S2|A|1183
7NRC|1|S2|A|1184
7NRC|1|S2|U|1185
7NRC|1|S2|U|1186
7NRC|1|S2|U|1187
*
7NRC|1|S2|G|1198
7NRC|1|S2|G|1199
7NRC|1|S2|G|1200
7NRC|1|S2|G|1201
7NRC|1|S2|A|1202
7NRC|1|S2|A|1203
7NRC|1|S2|A|1204
7NRC|1|S2|C|1205
7NRC|1|S2|U|1206
7NRC|1|S2|C|1207
7NRC|1|S2|A|1208
7NRC|1|S2|C|1209
*
7NRC|1|S2|G|1454
7NRC|1|S2|G|1455
7NRC|1|S2|C|1456
7NRC|1|S2|C|1457
7NRC|1|S2|G|1458

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SE
40S ribosomal protein S15
Chain SH
40S ribosomal protein S18-A
Chain SJ
40S ribosomal protein S20
Chain SM
40S ribosomal protein S29-A
Chain SN
40S ribosomal protein S31
Chain Sm
Transfer RNA; tRNA

Coloring options:


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