J3_7NRC_031
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 7NRC|1|LA|U|117, 7NRC|1|LA|G|120, 7NRC|1|LA|A|121, 7NRC|1|LA|U|147, 7NRC|1|LA|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRC|1|LA|C|113
7NRC|1|LA|A|114
7NRC|1|LA|A|115
7NRC|1|LA|A|116
7NRC|1|LA|U|117
7NRC|1|LA|U|118
7NRC|1|LA|U|119
7NRC|1|LA|G|120
7NRC|1|LA|A|121
7NRC|1|LA|A|122
7NRC|1|LA|A|123
7NRC|1|LA|U|124
*
7NRC|1|LA|A|144
7NRC|1|LA|G|145
7NRC|1|LA|U|146
7NRC|1|LA|U|147
7NRC|1|LA|G|148
7NRC|1|LA|U|149
7NRC|1|LA|A|150
7NRC|1|LA|A|151
7NRC|1|LA|U|152
7NRC|1|LA|U|153
7NRC|1|LA|U|154
7NRC|1|LA|G|155
7NRC|1|LA|G|156
7NRC|1|LA|A|157
7NRC|1|LA|G|158
*
7NRC|1|LA|C|263
7NRC|1|LA|G|264
7NRC|1|LA|A|265
7NRC|1|LA|A|266
7NRC|1|LA|G|267
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Lk
- 60S ribosomal protein L36-A
Coloring options: