J3_7NRC_038
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 7NRC|1|LA|A|3172, 7NRC|1|LA|G|3173, 7NRC|1|LA|A|3215, 7NRC|1|LA|G|3216, 7NRC|1|LA|G|3219, 7NRC|1|LA|A|3268, 7NRC|1|LA|U|3270, 7NRC|1|LA|C|3272, 7NRC|1|LA|U|3275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRC_038 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.1916
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7NRC|1|LA|U|3171
7NRC|1|LA|A|3172
7NRC|1|LA|G|3173
7NRC|1|LA|A|3174
7NRC|1|LA|U|3175
7NRC|1|LA|G|3176
*
7NRC|1|LA|C|3212
7NRC|1|LA|A|3213
7NRC|1|LA|U|3214
7NRC|1|LA|A|3215
7NRC|1|LA|G|3216
7NRC|1|LA|C|3217
7NRC|1|LA|A|3218
7NRC|1|LA|G|3219
7NRC|1|LA|G|3220
*
7NRC|1|LA|C|3265
7NRC|1|LA|G|3266
7NRC|1|LA|A|3267
7NRC|1|LA|A|3268
7NRC|1|LA|U|3269
7NRC|1|LA|U|3270
7NRC|1|LA|G|3271
7NRC|1|LA|C|3272
7NRC|1|LA|A|3273
7NRC|1|LA|A|3274
7NRC|1|LA|U|3275
7NRC|1|LA|G|3276
7NRC|1|LA|U|3277
7NRC|1|LA|C|3278
7NRC|1|LA|A|3279
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LH
- 60S ribosomal protein L6-B
- Chain LO
- 60S ribosomal protein L14-A
- Chain LQ
- 60S ribosomal protein L16-A
- Chain LR
- 60S ribosomal protein L17-A
- Chain Lh
- 60S ribosomal protein L33-A
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