J3_7NRC_039
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 7NRC|1|LC|U|60, 7NRC|1|LC|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRC_039 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0943
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
7NRC|1|LC|A|44
7NRC|1|LC|C|45
*
7NRC|1|LC|G|58
7NRC|1|LC|A|59
7NRC|1|LC|U|60
7NRC|1|LC|A|61
7NRC|1|LC|C|62
7NRC|1|LC|G|63
7NRC|1|LC|U|64
*
7NRC|1|LC|A|96
7NRC|1|LC|A|97
7NRC|1|LC|U|98
7NRC|1|LC|C|99
7NRC|1|LC|U|100
Current chains
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LZ
- 60S ribosomal protein L25
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
Coloring options: