J3_7NRC_041
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 7NRC|1|S2|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRC_041 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.148
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7NRC|1|S2|U|633
7NRC|1|S2|G|634
7NRC|1|S2|A|635
*
7NRC|1|S2|U|861
7NRC|1|S2|A|862
7NRC|1|S2|A|863
7NRC|1|S2|U|864
7NRC|1|S2|A|865
7NRC|1|S2|G|866
*
7NRC|1|S2|C|962
7NRC|1|S2|A|963
7NRC|1|S2|U|964
7NRC|1|S2|U|965
7NRC|1|S2|A|966
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SU
- 40S ribosomal protein S7-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain SY
- 40S ribosomal protein S13
- Chain Sb
- 40S ribosomal protein S22-A
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sf
- 40S ribosomal protein S27-A
Coloring options: