3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UGA*UAAUAG*CAUUA
Length
14 nucleotides
Bulged bases
7NRC|1|S2|U|864
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NRC_041 not in the Motif Atlas
Homologous match to J3_8P9A_072
Geometric discrepancy: 0.148
The information below is about J3_8P9A_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7NRC|1|S2|U|633
7NRC|1|S2|G|634
7NRC|1|S2|A|635
*
7NRC|1|S2|U|861
7NRC|1|S2|A|862
7NRC|1|S2|A|863
7NRC|1|S2|U|864
7NRC|1|S2|A|865
7NRC|1|S2|G|866
*
7NRC|1|S2|C|962
7NRC|1|S2|A|963
7NRC|1|S2|U|964
7NRC|1|S2|U|965
7NRC|1|S2|A|966

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SU
40S ribosomal protein S7-A
Chain SX
40S ribosomal protein S11-A
Chain SY
40S ribosomal protein S13
Chain Sb
40S ribosomal protein S22-A
Chain Sc
40S ribosomal protein S23-A
Chain Sf
40S ribosomal protein S27-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4193 s