J3_7NSI_004

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NSI_004 not in the Motif Atlas

Homologous match to J3_6CZR_019

Geometric discrepancy: 0.1997

The information below is about J3_6CZR_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NSI|1|AA|A|549
7NSI|1|AA|G|550
7NSI|1|AA|G|551
7NSI|1|AA|A|552
*
7NSI|1|AA|U|719
7NSI|1|AA|A|720
7NSI|1|AA|C|721
*
7NSI|1|AA|G|781
7NSI|1|AA|G|782
7NSI|1|AA|A|783
7NSI|1|AA|U|784

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AI

28S ribosomal protein S9, mitochondrial

Chain AV

tRNA (P/E)