J3_7NSI_010

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAG*CCAAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NSI_010 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.2165

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7NSI|1|BA|C|266
7NSI|1|BA|A|267
7NSI|1|BA|G|268
*
7NSI|1|BA|C|279
7NSI|1|BA|C|280
7NSI|1|BA|A|281
7NSI|1|BA|A|282
7NSI|1|BA|C|283
*
7NSI|1|BA|G|307
7NSI|1|BA|A|308
7NSI|1|BA|A|309
7NSI|1|BA|G|310

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BD

Ribosomal_L2_C domain-containing protein

Chain Ba

39S ribosomal protein L37, mitochondrial