J3_7NWH_004

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCAG*CGUAGC*GUCCGAC

Length

17 nucleotides

Bulged bases

7NWH|1|5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWH|1|5|G|1545
7NWH|1|5|C|1546
7NWH|1|5|A|1547
7NWH|1|5|G|1548
*
7NWH|1|5|C|1580
7NWH|1|5|G|1581
7NWH|1|5|U|1582
7NWH|1|5|A|1583
7NWH|1|5|G|1584
7NWH|1|5|C|1585
*
7NWH|1|5|G|1608
7NWH|1|5|U|1609
7NWH|1|5|C|1610
7NWH|1|5|C|1611
7NWH|1|5|G|1612
7NWH|1|5|A|1613
7NWH|1|5|C|1614

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain R

60S ribosomal protein L19

Chain g

60S ribosomal protein L34

Chain j

Ribosomal protein L37

Chain p

ribosomal protein eL43