J3_7NWH_012
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 7NWH|1|5|C|4116, 7NWH|1|5|U|4117, 7NWH|1|5|U|4118, 7NWH|1|5|C|4119, 7NWH|1|5|U|4120, 7NWH|1|5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWH_012 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.3012
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
7NWH|1|5|G|4091
7NWH|1|5|G|4092
7NWH|1|5|G|4093
7NWH|1|5|G|4094
*
7NWH|1|5|C|4114
7NWH|1|5|G|4115
7NWH|1|5|C|4116
7NWH|1|5|U|4117
7NWH|1|5|U|4118
7NWH|1|5|C|4119
7NWH|1|5|U|4120
7NWH|1|5|G|4121
7NWH|1|5|G|4122
7NWH|1|5|C|4123
7NWH|1|5|G|4124
7NWH|1|5|C|4125
7NWH|1|5|C|4126
7NWH|1|5|A|4127
7NWH|1|5|A|4128
7NWH|1|5|G|4129
*
7NWH|1|5|C|4155
7NWH|1|5|G|4156
7NWH|1|5|A|4157
7NWH|1|5|C|4158
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain G
- L7a
- Chain Z
- 60S ribosomal protein L27
- Chain c
- eL30
- Chain g
- 60S ribosomal protein L34
- Chain p
- ribosomal protein eL43
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