J3_7NWH_018
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWH_018 not in the Motif Atlas
- Homologous match to J3_8P9A_068
- Geometric discrepancy: 0.1745
- The information below is about J3_8P9A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.1
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7NWH|1|9|A|40
7NWH|1|9|G|41
*
7NWH|1|9|C|481
7NWH|1|9|G|482
7NWH|1|9|C|483
7NWH|1|9|A|484
7NWH|1|9|A|485
7NWH|1|9|A|486
7NWH|1|9|U|487
*
7NWH|1|9|A|512
7NWH|1|9|G|513
7NWH|1|9|U|514
Current chains
- Chain 9
- 18S Ribosomal RNA
Nearby chains
- Chain JJ
- 40S ribosomal protein S9
- Chain XX
- 40S ribosomal protein uS12
- Chain ii
- Eukaryotic peptide chain release factor subunit 1
- Chain jj
- eRF3a
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