J3_7NWI_003

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GCGCAGUC*GUGC*GACGUC

Length

18 nucleotides

Bulged bases

7NWI|1|5|G|703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|5|G|448
7NWI|1|5|C|449
7NWI|1|5|G|450
7NWI|1|5|C|451
7NWI|1|5|A|452
7NWI|1|5|G|453
7NWI|1|5|U|454
7NWI|1|5|C|455
*
7NWI|1|5|G|701
7NWI|1|5|U|702
7NWI|1|5|G|703
7NWI|1|5|C|704
*
7NWI|1|5|G|1293
7NWI|1|5|A|1294
7NWI|1|5|C|1295
7NWI|1|5|G|1296
7NWI|1|5|U|1297
7NWI|1|5|C|1298

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

eL32

Chain f

eL33