J3_7NWI_004
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- ACC*GAGGGAGCGAGACCCGUCGCCG*CACGGGGU
- Length
- 33 nucleotides
- Bulged bases
- 7NWI|1|5|A|960, 7NWI|1|5|C|962, 7NWI|1|5|G|963, 7NWI|1|5|A|964, 7NWI|1|5|G|965, 7NWI|1|5|A|966, 7NWI|1|5|C|967, 7NWI|1|5|C|968, 7NWI|1|5|G|1281, 7NWI|1|5|G|1284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NWI|1|5|A|711
7NWI|1|5|C|712
7NWI|1|5|C|713
*
7NWI|1|5|G|955
7NWI|1|5|A|956
7NWI|1|5|G|957
7NWI|1|5|G|958
7NWI|1|5|G|959
7NWI|1|5|A|960
7NWI|1|5|G|961
7NWI|1|5|C|962
7NWI|1|5|G|963
7NWI|1|5|A|964
7NWI|1|5|G|965
7NWI|1|5|A|966
7NWI|1|5|C|967
7NWI|1|5|C|968
7NWI|1|5|C|969
7NWI|1|5|G|970
7NWI|1|5|U|971
7NWI|1|5|C|972
7NWI|1|5|G|973
7NWI|1|5|C|974
7NWI|1|5|C|975
7NWI|1|5|G|976
*
7NWI|1|5|C|1278
7NWI|1|5|A|1279
7NWI|1|5|C|1280
7NWI|1|5|G|1281
7NWI|1|5|G|1282
7NWI|1|5|G|1283
7NWI|1|5|G|1284
7NWI|1|5|U|1285
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- 60S ribosomal protein L6
- Chain F
- uL30
- Chain e
- eL32
- Chain f
- eL33
- Chain r
- eL28
Coloring options: