J3_7NWI_015

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

7NWI|1|5|C|4990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|5|C|4970
7NWI|1|5|A|4971
7NWI|1|5|U|4972
*
7NWI|1|5|G|4986
7NWI|1|5|C|4987
7NWI|1|5|U|4988
7NWI|1|5|U|4989
7NWI|1|5|C|4990
7NWI|1|5|U|4991
*
7NWI|1|5|A|5060
7NWI|1|5|A|5061
7NWI|1|5|G|5062
7NWI|1|5|G|5063

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain B

uL3

Chain P

L17

Chain d

eL31