J3_7NWI_017
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- ACGCAGCUAGCU*AUU*ACACU
- Length
- 20 nucleotides
- Bulged bases
- 7NWI|1|8|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWI_017 not in the Motif Atlas
- Geometric match to J3_4WF9_001
- Geometric discrepancy: 0.3175
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7NWI|1|8|A|44
7NWI|1|8|C|45
7NWI|1|8|G|46
7NWI|1|8|C|47
7NWI|1|8|A|48
7NWI|1|8|G|49
7NWI|1|8|C|50
7NWI|1|8|U|51
7NWI|1|8|A|52
7NWI|1|8|G|53
7NWI|1|8|C|54
7NWI|1|8|U|55
*
7NWI|1|8|A|62
7NWI|1|8|U|63
7NWI|1|8|U|64
*
7NWI|1|8|A|95
7NWI|1|8|C|96
7NWI|1|8|A|97
7NWI|1|8|C|98
7NWI|1|8|U|99
Current chains
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- uL23
- Chain h
- uL29
- Chain j
- Ribosomal protein L37
- Chain l
- ribosomal protein eL39
Coloring options: