J3_7NWI_021
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7NWI|1|9|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWI_021 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1295
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7NWI|1|9|A|938
7NWI|1|9|U|939
7NWI|1|9|U|940
7NWI|1|9|C|941
*
7NWI|1|9|G|985
7NWI|1|9|G|986
7NWI|1|9|A|987
7NWI|1|9|C|988
7NWI|1|9|C|989
7NWI|1|9|A|990
7NWI|1|9|G|991
7NWI|1|9|A|992
7NWI|1|9|G|993
*
7NWI|1|9|C|1000
7NWI|1|9|A|1001
7NWI|1|9|U|1002
7NWI|1|9|U|1003
7NWI|1|9|U|1004
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain BB
- 40S ribosomal protein S3a
- Chain NN
- ribosomal protein uS15
- Chain OO
- S14
- Chain aa
- 40S ribosomal protein S26
- Chain p
- ribosomal protein eL43
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