J3_7NWI_037
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAGCGC*GCGCGAC
- Length
- 30 nucleotides
- Bulged bases
- 7NWI|1|5|U|4117, 7NWI|1|5|U|4118, 7NWI|1|5|G|4121, 7NWI|1|5|A|4127, 7NWI|1|5|G|4154
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NWI|1|5|G|4091
7NWI|1|5|G|4092
7NWI|1|5|G|4093
7NWI|1|5|G|4094
*
7NWI|1|5|C|4114
7NWI|1|5|G|4115
7NWI|1|5|C|4116
7NWI|1|5|U|4117
7NWI|1|5|U|4118
7NWI|1|5|C|4119
7NWI|1|5|U|4120
7NWI|1|5|G|4121
7NWI|1|5|G|4122
7NWI|1|5|C|4123
7NWI|1|5|G|4124
7NWI|1|5|C|4125
7NWI|1|5|C|4126
7NWI|1|5|A|4127
7NWI|1|5|A|4128
7NWI|1|5|G|4129
7NWI|1|5|C|4130
7NWI|1|5|G|4131
7NWI|1|5|C|4132
*
7NWI|1|5|G|4152
7NWI|1|5|C|4153
7NWI|1|5|G|4154
7NWI|1|5|C|4155
7NWI|1|5|G|4156
7NWI|1|5|A|4157
7NWI|1|5|C|4158
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain A
- L8
- Chain G
- 60S ribosomal protein L7a
- Chain X
- uL23
- Chain Z
- 60S ribosomal protein L27
- Chain c
- eL30
- Chain g
- 60S ribosomal protein L34
- Chain p
- ribosomal protein eL43
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