J3_7NWT_003

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7NWT|1|1|U|686, 7NWT|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWT_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0581

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7NWT|1|1|U|683
7NWT|1|1|G|684
7NWT|1|1|A|685
7NWT|1|1|U|686
7NWT|1|1|C|687
7NWT|1|1|U|688
7NWT|1|1|A|689
*
7NWT|1|1|U|773
7NWT|1|1|G|774
7NWT|1|1|G|775
*
7NWT|1|1|C|791
7NWT|1|1|A|792
7NWT|1|1|A|793
7NWT|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34