J3_7NWT_004

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWT_004 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0565

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7NWT|1|1|C|698
7NWT|1|1|A|699
7NWT|1|1|G|700
*
7NWT|1|1|C|732
7NWT|1|1|G|733
7NWT|1|1|A|734
7NWT|1|1|A|735
7NWT|1|1|C|736
*
7NWT|1|1|G|760
7NWT|1|1|A|761
7NWT|1|1|U|762
7NWT|1|1|G|763

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2