J3_7NWT_017

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWT_017 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0771

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

7NWT|1|2|C|936
7NWT|1|2|A|937
7NWT|1|2|A|938
7NWT|1|2|G|939
*
7NWT|1|2|C|1344
7NWT|1|2|U|1345
7NWT|1|2|A|1346
7NWT|1|2|G|1347
7NWT|1|2|U|1348
7NWT|1|2|A|1349
7NWT|1|2|A|1350
*
7NWT|1|2|U|1372
7NWT|1|2|G|1373
7NWT|1|2|A|1374
7NWT|1|2|A|1375
7NWT|1|2|U|1376
7NWT|1|2|A|1377
7NWT|1|2|C|1378
7NWT|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9