3D structure

PDB id
7O1A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GC*GGAAUAU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7O1A_001 not in the Motif Atlas
Homologous match to J3_5J7L_001
Geometric discrepancy: 0.083
The information below is about J3_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.4
Basepair signature
cWW-cWW-cSW-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7O1A|1|AA|G|46
7O1A|1|AA|C|47
*
7O1A|1|AA|G|361
7O1A|1|AA|G|362
7O1A|1|AA|A|363
7O1A|1|AA|A|364
7O1A|1|AA|U|365
7O1A|1|AA|A|366
7O1A|1|AA|U|367
*
7O1A|1|AA|A|393
7O1A|1|AA|G|394
7O1A|1|AA|C|395

Current chains

Chain AA
Ribosomal RNA 16S

Nearby chains

Chain AL
30S ribosomal protein S12
Chain AP
30S ribosomal protein S16

Coloring options:


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