J3_7O5B_001

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O5B_001 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1607

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7O5B|1|A|G|48
7O5B|1|A|C|49
*
7O5B|1|A|G|369
7O5B|1|A|G|370
7O5B|1|A|A|371
7O5B|1|A|A|372
7O5B|1|A|U|373
7O5B|1|A|C|374
7O5B|1|A|U|375
*
7O5B|1|A|A|401
7O5B|1|A|G|402
7O5B|1|A|C|403

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16