J3_7O5B_015

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

ACGGGACGAACA*UGC*GAUUU

Length

20 nucleotides

Bulged bases

7O5B|1|X|A|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O5B_015 not in the Motif Atlas

Homologous match to J3_4WF9_001

Geometric discrepancy: 0.3598

The information below is about J3_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47707.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F

Number of instances in this motif group

1

Unit IDs

7O5B|1|X|A|56
7O5B|1|X|C|57
7O5B|1|X|G|58
7O5B|1|X|G|59
7O5B|1|X|G|60
7O5B|1|X|A|61
7O5B|1|X|C|62
7O5B|1|X|G|63
7O5B|1|X|A|64
7O5B|1|X|A|65
7O5B|1|X|C|66
7O5B|1|X|A|67
*
7O5B|1|X|U|74
7O5B|1|X|G|75
7O5B|1|X|C|76
*
7O5B|1|X|G|109
7O5B|1|X|A|110
7O5B|1|X|U|111
7O5B|1|X|U|112
7O5B|1|X|U|113

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 2

50S ribosomal protein L34

Chain s

50S ribosomal protein L23

Chain w

50S ribosomal protein L29