J3_7O5B_016

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7O5B|1|X|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O5B_016 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.3698

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7O5B|1|X|C|272
7O5B|1|X|A|273
7O5B|1|X|A|274
7O5B|1|X|A|275
7O5B|1|X|C|276
*
7O5B|1|X|G|295
7O5B|1|X|G|296
7O5B|1|X|G|297
7O5B|1|X|U|298
7O5B|1|X|U|299
7O5B|1|X|G|300
7O5B|1|X|U|301
7O5B|1|X|A|302
*
7O5B|1|X|U|416
7O5B|1|X|G|417

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains