J3_7O5B_019

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGA*UUUAAAGAGUGC*GCUCAC

Length

21 nucleotides

Bulged bases

7O5B|1|X|A|1130, 7O5B|1|X|G|1133, 7O5B|1|X|A|1134, 7O5B|1|X|G|1135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O5B|1|X|G|1101
7O5B|1|X|G|1102
7O5B|1|X|A|1103
*
7O5B|1|X|U|1127
7O5B|1|X|U|1128
7O5B|1|X|U|1129
7O5B|1|X|A|1130
7O5B|1|X|A|1131
7O5B|1|X|A|1132
7O5B|1|X|G|1133
7O5B|1|X|A|1134
7O5B|1|X|G|1135
7O5B|1|X|U|1136
7O5B|1|X|G|1137
7O5B|1|X|C|1138
*
7O5B|1|X|G|1145
7O5B|1|X|C|1146
7O5B|1|X|U|1147
7O5B|1|X|C|1148
7O5B|1|X|A|1149
7O5B|1|X|C|1150

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 4

50S ribosomal protein L36

Chain d

50S ribosomal protein L6

Chain p

50S ribosomal protein L10

Chain q

50S ribosomal protein L11