J3_7O5B_023
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UUG*CUAACC*GAGACAG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O5B_023 not in the Motif Atlas
- Homologous match to J3_4WF9_007
- Geometric discrepancy: 0.3431
- The information below is about J3_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07703.1
- Basepair signature
- cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7O5B|1|X|U|2120
7O5B|1|X|U|2121
7O5B|1|X|G|2122
*
7O5B|1|X|C|2225
7O5B|1|X|U|2226
7O5B|1|X|A|2227
7O5B|1|X|A|2228
7O5B|1|X|C|2229
7O5B|1|X|C|2230
*
7O5B|1|X|G|2251
7O5B|1|X|A|2252
7O5B|1|X|G|2253
7O5B|1|X|A|2254
7O5B|1|X|C|2255
7O5B|1|X|A|2256
7O5B|1|X|G|2257
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain Z
- 50S ribosomal protein L2
- Chain v
- 50S ribosomal protein L28
Coloring options: