J3_7O5B_024
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CUCAG*CGCAGAG*CACAAG
- Length
- 18 nucleotides
- Bulged bases
- 7O5B|1|X|C|2363
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O5B_024 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.454
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7O5B|1|X|C|2324
7O5B|1|X|U|2325
7O5B|1|X|C|2326
7O5B|1|X|A|2327
7O5B|1|X|G|2328
*
7O5B|1|X|C|2346
7O5B|1|X|G|2347
7O5B|1|X|C|2348
7O5B|1|X|A|2349
7O5B|1|X|G|2350
7O5B|1|X|A|2351
7O5B|1|X|G|2352
*
7O5B|1|X|C|2361
7O5B|1|X|A|2362
7O5B|1|X|C|2363
7O5B|1|X|A|2364
7O5B|1|X|A|2365
7O5B|1|X|G|2366
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain U
- Transfer RNA; tRNA
- Chain Y
- 5S ribosomal RNA; 5S rRNA
- Chain c
- 50S ribosomal protein L5
- Chain l
- 50S ribosomal protein L18
- Chain u
- 50S ribosomal protein L27
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