J3_7O5B_027

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAUAG*CGC*GACG

Length

13 nucleotides

Bulged bases

7O5B|1|Y|G|10, 7O5B|1|Y|C|106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O5B|1|Y|C|9
7O5B|1|Y|G|10
7O5B|1|Y|A|11
7O5B|1|Y|U|12
7O5B|1|Y|A|13
7O5B|1|Y|G|14
*
7O5B|1|Y|C|66
7O5B|1|Y|G|67
7O5B|1|Y|C|68
*
7O5B|1|Y|G|104
7O5B|1|Y|A|105
7O5B|1|Y|C|106
7O5B|1|Y|G|107

Current chains

Chain Y

5S rRNA (112-MER)

Nearby chains

Chain X

Large subunit ribosomal RNA; LSU rRNA

Chain u

50S ribosomal protein L27