J3_7O5B_039
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O5B_039 not in the Motif Atlas
- Homologous match to J3_4WF9_017
- Geometric discrepancy: 0.0971
- The information below is about J3_4WF9_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.3
- Basepair signature
- cWW-tSH-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7O5B|1|X|G|1470
7O5B|1|X|G|1471
7O5B|1|X|G|1472
7O5B|1|X|A|1473
7O5B|1|X|C|1474
7O5B|1|X|G|1475
*
7O5B|1|X|C|1612
7O5B|1|X|C|1613
*
7O5B|1|X|G|1616
7O5B|1|X|A|1617
7O5B|1|X|A|1618
7O5B|1|X|A|1619
7O5B|1|X|A|1620
7O5B|1|X|G|1621
7O5B|1|X|C|1622
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain Z
- 50S ribosomal protein L2
Coloring options: