J3_7O5B_040
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GCC*GCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 7O5B|1|X|A|2455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O5B_040 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1352
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7O5B|1|X|G|2311
7O5B|1|X|C|2312
7O5B|1|X|C|2313
*
7O5B|1|X|G|2413
7O5B|1|X|C|2414
7O5B|1|X|U|2415
7O5B|1|X|U|2416
7O5B|1|X|A|2417
7O5B|1|X|G|2418
7O5B|1|X|U|2419
7O5B|1|X|G|2420
7O5B|1|X|A|2421
7O5B|1|X|U|2422
7O5B|1|X|C|2423
7O5B|1|X|C|2424
*
7O5B|1|X|G|2450
7O5B|1|X|C|2451
7O5B|1|X|U|2452
7O5B|1|X|C|2453
7O5B|1|X|A|2454
7O5B|1|X|A|2455
7O5B|1|X|C|2456
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain 1
- 50S ribosomal protein L33 1
- Chain 3
- 50S ribosomal protein L35
- Chain i
- 50S ribosomal protein L15
- Chain u
- 50S ribosomal protein L27
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