J3_7O5B_041

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GACAAU*ACGUCC*GGC

Length

15 nucleotides

Bulged bases

7O5B|1|A|A|1014, 7O5B|1|A|U|1034, 7O5B|1|A|C|1035

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O5B|1|A|G|1013
7O5B|1|A|A|1014
7O5B|1|A|C|1015
7O5B|1|A|A|1016
7O5B|1|A|A|1017
7O5B|1|A|U|1018
*
7O5B|1|A|A|1031
7O5B|1|A|C|1032
7O5B|1|A|G|1033
7O5B|1|A|U|1034
7O5B|1|A|C|1035
7O5B|1|A|C|1036
*
7O5B|1|A|G|1045
7O5B|1|A|G|1046
7O5B|1|A|C|1047

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain C

30S ribosomal protein S3