J3_7O7Y_005
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUG*UUCCG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 7O7Y|1|A2|C|1139, 7O7Y|1|A2|A|1151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O7Y|1|A2|C|1095
7O7Y|1|A2|U|1096
7O7Y|1|A2|G|1097
*
7O7Y|1|A2|U|1137
7O7Y|1|A2|U|1138
7O7Y|1|A2|C|1139
7O7Y|1|A2|C|1140
7O7Y|1|A2|G|1141
*
7O7Y|1|A2|C|1148
7O7Y|1|A2|A|1149
7O7Y|1|A2|A|1150
7O7Y|1|A2|A|1151
7O7Y|1|A2|G|1152
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AA
- 40S ribosomal protein S27
- Chain AE
- Ribosomal protein eS26
- Chain AZ
- 40S ribosomal protein SA
- Chain Au
- Ribosomal protein eS21
- Chain Av
- Ribosomal protein S15a
Coloring options: