J3_7O7Y_008
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)G*CGGGAAACCUCAC*GGCUG
- Length
- 27 nucleotides
- Bulged bases
- 7O7Y|1|A2|G|1257, 7O7Y|1|A2|A|1259, 7O7Y|1|A2|A|1261
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O7Y|1|A2|C|1238
7O7Y|1|A2|PSU|1239
7O7Y|1|A2|U|1240
7O7Y|1|A2|A|1241
7O7Y|1|A2|A|1242
7O7Y|1|A2|U|1243
7O7Y|1|A2|U|1244
7O7Y|1|A2|PSU|1245
7O7Y|1|A2|G|1246
*
7O7Y|1|A2|C|1255
7O7Y|1|A2|G|1256
7O7Y|1|A2|G|1257
7O7Y|1|A2|G|1258
7O7Y|1|A2|A|1259
7O7Y|1|A2|A|1260
7O7Y|1|A2|A|1261
7O7Y|1|A2|C|1262
7O7Y|1|A2|C|1263
7O7Y|1|A2|U|1264
7O7Y|1|A2|C|1265
7O7Y|1|A2|A|1266
7O7Y|1|A2|C|1267
*
7O7Y|1|A2|G|1517
7O7Y|1|A2|G|1518
7O7Y|1|A2|C|1519
7O7Y|1|A2|U|1520
7O7Y|1|A2|G|1521
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AC
- Ribosomal protein S27a
- Chain AG
- uS14
- Chain Ao
- 40S ribosomal protein uS19
- Chain Ap
- uS9
- Chain Ar
- 40S ribosomal protein S18
- Chain At
- 40S ribosomal protein uS10
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