J3_7O7Y_034

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAGAUCAAAACCAACCC*GGCGGCUUUG*CUAG

Length

31 nucleotides

Bulged bases

7O7Y|1|A2|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Y|1|A2|C|223
7O7Y|1|A2|A|224
7O7Y|1|A2|G|225
7O7Y|1|A2|A|226
7O7Y|1|A2|U|227
7O7Y|1|A2|C|228
7O7Y|1|A2|A|229
7O7Y|1|A2|A|230
7O7Y|1|A2|A|231
7O7Y|1|A2|A|232
7O7Y|1|A2|C|233
7O7Y|1|A2|C|234
7O7Y|1|A2|A|235
7O7Y|1|A2|A|236
7O7Y|1|A2|C|237
7O7Y|1|A2|C|238
7O7Y|1|A2|C|239
*
7O7Y|1|A2|G|280
7O7Y|1|A2|G|281
7O7Y|1|A2|C|282
7O7Y|1|A2|G|283
7O7Y|1|A2|G|284
7O7Y|1|A2|C|285
7O7Y|1|A2|U|286
7O7Y|1|A2|U|287
7O7Y|1|A2|U|288
7O7Y|1|A2|G|289
*
7O7Y|1|A2|C|296
7O7Y|1|A2|U|297
7O7Y|1|A2|A|298
7O7Y|1|A2|G|299

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11