J3_7O7Y_040
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 7O7Y|1|B5|U|354, 7O7Y|1|B5|A|362, 7O7Y|1|B8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O7Y_040 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0467
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
7O7Y|1|B5|C|351
7O7Y|1|B5|G|352
7O7Y|1|B5|A|353
7O7Y|1|B5|U|354
7O7Y|1|B5|A|355
7O7Y|1|B5|G|356
7O7Y|1|B5|U|357
7O7Y|1|B5|C|358
7O7Y|1|B5|A|359
7O7Y|1|B5|A|360
7O7Y|1|B5|C|361
7O7Y|1|B5|A|362
7O7Y|1|B5|A|363
7O7Y|1|B5|G|364
7O7Y|1|B5|U|365
7O7Y|1|B5|A|366
7O7Y|1|B5|C|367
*
7O7Y|1|B5|G|374
7O7Y|1|B5|G|375
7O7Y|1|B5|A|376
7O7Y|1|B5|A|377
7O7Y|1|B5|A|378
7O7Y|1|B5|G|379
*
7O7Y|1|B8|C|21
7O7Y|1|B8|U|22
7O7Y|1|B8|C|23
7O7Y|1|B8|G|24
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BK
- Replicase polyprotein 1ab
- Chain BY
- Ribosomal protein L26
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- eL39
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