J3_7O7Z_004

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAUUC*GGACCAGAG*CAUU(PSU)G

Length

20 nucleotides

Bulged bases

7O7Z|1|A2|G|992

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|A2|C|938
7O7Z|1|A2|A|939
7O7Z|1|A2|U|940
7O7Z|1|A2|U|941
7O7Z|1|A2|C|942
*
7O7Z|1|A2|G|986
7O7Z|1|A2|G|987
7O7Z|1|A2|A|988
7O7Z|1|A2|C|989
7O7Z|1|A2|C|990
7O7Z|1|A2|A|991
7O7Z|1|A2|G|992
7O7Z|1|A2|A|993
7O7Z|1|A2|G|994
*
7O7Z|1|A2|C|1001
7O7Z|1|A2|A|1002
7O7Z|1|A2|U|1003
7O7Z|1|A2|U|1004
7O7Z|1|A2|PSU|1005
7O7Z|1|A2|G|1006

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

Ribosomal protein eS26

Chain Aa

40S ribosomal protein S3a

Chain Am

uS15

Chain An

40S ribosomal protein uS11

Chain Bp

eL43